ReFRACtor
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This gives the Aerosol properties for an Aerosol. More...
#include <aerosol_property_rh_hdf.h>
Public Member Functions | |
AerosolPropertyRhHdf (const HdfFile &F, const std::string &Group_name, const boost::shared_ptr< Pressure > &Press, const boost::shared_ptr< RelativeHumidity > &Rh) | |
Read the given group in the given file for the aerosol properties. More... | |
virtual | ~AerosolPropertyRhHdf () |
virtual void | add_observer (Observer< AerosolProperty > &Obs) |
Add an observer. More... | |
void | add_observer_and_keep_reference (boost::shared_ptr< Observer< AerosolProperty > > &Obs) |
Add an observer and keep a reference to it. More... | |
blitz::Array< double, 1 > | aerosol_parameter () const |
Returns the value of the coefficients used to generate the aerosol property. More... | |
blitz::Array< double, 1 > | aerosol_parameter_uncertainty () const |
Returns the uncertainty of the aerosol type coefficients. More... | |
virtual boost::shared_ptr< AerosolProperty > | clone () const |
Clone a AerosolProperty object. More... | |
virtual boost::shared_ptr< AerosolProperty > | clone (const boost::shared_ptr< Pressure > &Press, const boost::shared_ptr< RelativeHumidity > &Rh) const |
This version of clone takes a pressure to use. More... | |
const ArrayAd< double, 1 > & | coefficient () const |
virtual std::string | desc () const |
Description of object, to be printed to stream. More... | |
virtual ArrayAd< double, 1 > | extinction_coefficient_each_layer (double wn) const |
Return extinction coefficient for the given wave number, for each layer. More... | |
virtual ArrayAd< double, 1 > | extinction_coefficient_each_layer_not_used (double wn) const |
void | init (const blitz::Array< double, 1 > &Coeff, const blitz::Array< bool, 1 > &Used_flag, const boost::shared_ptr< Pressure > &Press=boost::shared_ptr< Pressure >(), bool Mark_according_to_press=true, int Pdep_start=0) |
virtual void | mark_used (const StateVector &Sv, blitz::Array< bool, 1 > &Used) const |
Mark elements that we are actively using (i.e., that aren't ignored). More... | |
virtual void | mark_used (const StateVector &Sv, blitz::Array< bool, 1 > &Used) const |
Mark elements that we are actively using (i.e., that aren't ignored). More... | |
void | mark_used_sub (blitz::Array< bool, 1 > &Used) const |
Called by mark_used with the subset of the state vector used by this class. More... | |
virtual void | notify_add (StateVector &Observed_object) |
Called when an object is added to an Observable. More... | |
virtual void | notify_add () |
virtual void | notify_add (StateVector &Sv) |
Called when an object is added to an Observable. More... | |
virtual void | notify_remove (StateVector &Observed_object) |
Called when an object is removed from an Observable. More... | |
virtual void | notify_remove () |
virtual void | notify_remove (StateVector &Sv) |
Called when an object is removed from an Observable. More... | |
virtual void | notify_update (const StateVector &Sv) |
Called when the Observed object is updated. More... | |
virtual void | notify_update (const StateVector &Observed_object) |
Called when the Observed object is updated. More... | |
virtual ArrayAd< double, 3 > | phase_function_moment_each_layer (double wn, int nmom=-1, int nscatt=-1) const |
Return phase function moments for the given wave number for each layer. More... | |
ArrayAd< double, 3 > | phase_function_moment_each_layer_not_used (double wn, int nmom=-1, int nscatt=-1) const |
const boost::shared_ptr< Pressure > & | pressure () const |
virtual void | print (std::ostream &Os) const |
Print to stream. More... | |
std::string | print_to_string () const |
Print to string. More... | |
virtual void | remove_observer (Observer< AerosolProperty > &Obs) |
Remove an observer. More... | |
virtual ArrayAd< double, 1 > | scattering_coefficient_each_layer (double wn) const |
Return scattering coefficient for the given wave number for each layer. More... | |
virtual ArrayAd< double, 1 > | scattering_coefficient_each_layer_not_used (double wn) const |
virtual void | state_vector_name (const StateVector &Sv, blitz::Array< std::string, 1 > &Sv_name) const |
Update any portion of the list of the state vector names that apply to this object. More... | |
virtual void | state_vector_name (const StateVector &Sv, blitz::Array< std::string, 1 > &Sv_name) const |
Update any portion of the list of the state vector names that apply to this object. More... | |
virtual std::string | state_vector_name_i (int i) const |
Return state vector name for ith entry in coeff. More... | |
virtual void | state_vector_name_sub (blitz::Array< std::string, 1 > &Sv_name) const |
Called by state_vector_name with the subset of the Sv_name used by this class. More... | |
int | state_vector_start_index () const |
Starting index of state vector used by this object. More... | |
const blitz::Array< double, 2 > & | statevector_covariance () const |
virtual std::string | sub_state_identifier () const |
Return a string to identify this part of the state, this name should be all lower case and seperate parts with a /. More... | |
int | sub_vector_size () const |
Length of the sub set of the state vector used by this object. More... | |
virtual void | update_sub_state (const ArrayAd< double, 1 > &Sv_sub, const blitz::Array< double, 2 > &Cov) |
Called by update_state with the subset of the state vector used by this class. More... | |
virtual void | update_sub_state_hook () |
Hook for anything a derived class needs to do after coefficient is updated and before notify_update. More... | |
const blitz::Array< bool, 1 > & | used_flag_value () const |
Protected Member Functions | |
void | add_observer_do (Observer< AerosolProperty > &Obs, AerosolProperty &t) |
Add an observer. More... | |
void | add_observer_do (Observer< AerosolProperty > &Obs) |
void | clean_dead_ptr () |
Remove any dead pointers. More... | |
void | init (const blitz::Array< double, 1 > &Coeff, const blitz::Array< bool, 1 > &Used_flag) |
Initialize object. More... | |
void | notify_update_do (const AerosolProperty &Self) |
Function to call to notify Observers of a state change. More... | |
void | remove_observer_do (Observer< AerosolProperty > &Obs, AerosolProperty &t) |
Remove an observer. More... | |
void | remove_observer_do (Observer< AerosolProperty > &Obs) |
void | state_vector_observer_initialize (int Plen) |
Take the given number of state vector parameters. More... | |
Protected Attributes | |
ArrayAd< double, 1 > | coeff |
Coefficients. More... | |
blitz::Array< double, 2 > | cov |
Last covariance matrix updated from the StateVector. More... | |
bool | mark_according_to_press |
Flag indicating if we only mark coefficients >= pdep_start + press->number_level() in mark_used_sub. More... | |
std::list< boost::weak_ptr< Observer< AerosolProperty > > > | olist |
int | pdep_start |
Index of first coefficient that depends on the number of pressure levels. More... | |
boost::shared_ptr< Pressure > | press |
Pressure. More... | |
std::vector< boost::shared_ptr< Observer< AerosolProperty > > > | ref_list |
blitz::Array< double, 2 > | sv_cov_full |
The last full covariance matrix we have been with, saved for reference by derived class. More... | |
blitz::Array< double, 2 > | sv_cov_sub |
The subset of cov_full that is "owned" by this class, what was passed through update_sub_state. More... | |
ArrayAd< double, 1 > | sv_full |
The last full state vector we have been updated with, saved for reference by derived class. More... | |
ArrayAd< double, 1 > | sv_sub |
The subset of sv_full that is "owned" by this class, what was passed through update_sub_state. More... | |
blitz::Array< bool, 1 > | used_flag |
Flag indicating which of the coefficients gets updated by the StateVector. More... | |
This gives the Aerosol properties for an Aerosol.
This particular implementation reads the Aerosol properties from the HDF group in a HDF file. The fields "wave_number", "extinction_coefficient", "scattering_coefficient" and "phase_function_moment" are read.
The HDF file supplies the particle properties for a few wavenumbers. We then linearly interpolate to get the aerosol properties for wavenumbers between these value. If a wavenumber outside the range of the file is requested, then we extrapolate to get the value.
This variation of AerosolProperty interpolates the aerosol properties by the relative humidity.
Definition at line 25 of file aerosol_property_rh_hdf.h.
AerosolPropertyRhHdf::AerosolPropertyRhHdf | ( | const HdfFile & | F, |
const std::string & | Group_name, | ||
const boost::shared_ptr< Pressure > & | Press, | ||
const boost::shared_ptr< RelativeHumidity > & | Rh | ||
) |
Read the given group in the given file for the aerosol properties.
Definition at line 21 of file aerosol_property_rh_hdf.cc.
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inlinevirtual |
Definition at line 30 of file aerosol_property_rh_hdf.h.
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inlinevirtualinherited |
Add an observer.
Implements FullPhysics::Observable< AerosolProperty >.
Definition at line 30 of file aerosol_property.h.
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inlineinherited |
Add an observer and keep a reference to it.
See the discussion in the Observer class description for details.
Definition at line 107 of file observer.h.
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inlineprotectedinherited |
Add an observer.
Definition at line 148 of file observer.h.
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inlineprotectedinherited |
Definition at line 159 of file observer.h.
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inlineinherited |
Returns the value of the coefficients used to generate the aerosol property.
Definition at line 61 of file aerosol_property_imp_base.h.
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inlineinherited |
Returns the uncertainty of the aerosol type coefficients.
Definition at line 70 of file aerosol_property_imp_base.h.
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inlineprotectedinherited |
Remove any dead pointers.
Definition at line 196 of file observer.h.
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virtual |
Clone a AerosolProperty object.
Note that the cloned version will not be attached to a StateVector or Observer<AerosolProperty>, although you can of course attach them after receiving the cloned object.
Because this isn't attached to the StateVector, one use of the clone operator is to create a "frozen" AerosolProperty object.
Implements FullPhysics::AerosolPropertyImpBase.
Definition at line 60 of file aerosol_property_rh_hdf.cc.
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This version of clone takes a pressure to use.
The intent is that the pressure has been cloned from the original pressure (although this class has no way to verify this). This allows sets of objects to be cloned using a common Pressure clone, e.g. Atmosphere.
Implements FullPhysics::AerosolPropertyImpBase.
Definition at line 66 of file aerosol_property_rh_hdf.cc.
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inlineinherited |
Definition at line 171 of file sub_state_vector_array.h.
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inlinevirtualinherited |
Description of object, to be printed to stream.
This gives a cleaner interface for deriving from python.
Definition at line 54 of file aerosol_property_imp_base.h.
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virtual |
Return extinction coefficient for the given wave number, for each layer.
wn | - Wavenumber |
Implements FullPhysics::AerosolPropertyImpBase.
Definition at line 98 of file aerosol_property_rh_hdf.cc.
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virtual |
Definition at line 83 of file aerosol_property_rh_hdf.cc.
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inlineinherited |
Definition at line 59 of file sub_state_vector_array.h.
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inlineprotectedinherited |
Initialize object.
Definition at line 87 of file aerosol_property_imp_base.h.
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virtualinherited |
Mark elements that we are actively using (i.e., that aren't ignored).
You only need to mark the ones that are used as true, everything is already initialized as false. Default is to do nothing.
Reimplemented from FullPhysics::StateVectorObserver.
Definition at line 35 of file sub_state_vector_observer.cc.
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inlinevirtualinherited |
Mark elements that we are actively using (i.e., that aren't ignored).
You only need to mark the ones that are used as true, everything is already initialized as false. Default is to do nothing.
Reimplemented in FullPhysics::SubStateVectorObserver.
Definition at line 26 of file state_vector_observer.h.
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inlinevirtualinherited |
Called by mark_used with the subset of the state vector used by this class.
The default marks everything as used, but derived classes can override this.
Reimplemented from FullPhysics::SubStateVectorObserver.
Definition at line 91 of file sub_state_vector_array.h.
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inlinevirtualinherited |
Called when an object is added to an Observable.
Default is to do nothing.
Reimplemented in FullPhysics::AtmosphereOco, and FullPhysics::SubStateVectorObserver.
Definition at line 47 of file observer.h.
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inlinevirtualinherited |
Definition at line 48 of file observer.h.
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inlinevirtualinherited |
Called when an object is added to an Observable.
Default is to do nothing.
Reimplemented from FullPhysics::Observer< StateVector >.
Definition at line 60 of file sub_state_vector_observer.h.
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inlinevirtualinherited |
Called when an object is removed from an Observable.
Default is to do nothing.
Reimplemented in FullPhysics::AtmosphereOco, and FullPhysics::SubStateVectorObserver.
Definition at line 55 of file observer.h.
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inlinevirtualinherited |
Definition at line 56 of file observer.h.
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inlinevirtualinherited |
Called when an object is removed from an Observable.
Default is to do nothing.
Reimplemented from FullPhysics::Observer< StateVector >.
Definition at line 68 of file sub_state_vector_observer.h.
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virtualinherited |
Called when the Observed object is updated.
Reimplemented from FullPhysics::Observer< StateVector >.
Reimplemented in FullPhysics::RadianceScalingSvFit.
Definition at line 6 of file sub_state_vector_observer.cc.
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inlinevirtualinherited |
Called when the Observed object is updated.
Reimplemented in FullPhysics::AtmosphereOco, FullPhysics::RadianceScalingSvFit, FullPhysics::AbsorberAbsco, FullPhysics::AerosolOptical, and FullPhysics::SubStateVectorObserver.
Definition at line 40 of file observer.h.
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inlineprotectedinherited |
Function to call to notify Observers of a state change.
The object should pass itself to this function, so it can be passed to the Observers.
Definition at line 121 of file observer.h.
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virtual |
Return phase function moments for the given wave number for each layer.
Note that we use the de Rooij convention for the scattering matrix moments.
wn | Wavenumber |
nmom | Optional number of moments to return. Default is all moments. |
nscatt | Optional number of scattering elements to return. Default is all of them. |
Implements FullPhysics::AerosolPropertyImpBase.
Definition at line 181 of file aerosol_property_rh_hdf.cc.
ArrayAd< double, 3 > AerosolPropertyRhHdf::phase_function_moment_each_layer_not_used | ( | double | wn, |
int | nmom = -1 , |
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int | nscatt = -1 |
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) | const |
Definition at line 157 of file aerosol_property_rh_hdf.cc.
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inlineinherited |
Definition at line 186 of file sub_state_vector_array.h.
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virtual |
Print to stream.
The default calls the function "desc" that returns a string. This gives cleaner interface for deriving from this class in python, but most C++ classes will want to override this function rather than using desc.
Reimplemented from FullPhysics::AerosolPropertyImpBase.
Definition at line 199 of file aerosol_property_rh_hdf.cc.
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inlineinherited |
Print to string.
This is primarily useful for SWIG wrappers to this class, e.g. a to_s method in ruby.
Definition at line 31 of file printable.h.
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inlinevirtualinherited |
Remove an observer.
Implements FullPhysics::Observable< AerosolProperty >.
Definition at line 32 of file aerosol_property.h.
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inlineprotectedinherited |
Remove an observer.
Definition at line 173 of file observer.h.
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inlineprotectedinherited |
Definition at line 181 of file observer.h.
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virtual |
Return scattering coefficient for the given wave number for each layer.
wn | - Wavenumber |
Implements FullPhysics::AerosolPropertyImpBase.
Definition at line 136 of file aerosol_property_rh_hdf.cc.
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virtual |
Definition at line 121 of file aerosol_property_rh_hdf.cc.
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virtualinherited |
Update any portion of the list of the state vector names that apply to this object.
Default is to do nothing.
Reimplemented from FullPhysics::StateVectorObserver.
Definition at line 52 of file sub_state_vector_observer.cc.
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inlinevirtualinherited |
Update any portion of the list of the state vector names that apply to this object.
Default is to do nothing.
Reimplemented in FullPhysics::SubStateVectorObserver.
Definition at line 34 of file state_vector_observer.h.
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inlinevirtualinherited |
Return state vector name for ith entry in coeff.
Reimplemented from FullPhysics::SubStateVectorArray< AerosolProperty >.
Definition at line 35 of file aerosol_property_imp_base.h.
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inlinevirtualinherited |
Called by state_vector_name with the subset of the Sv_name used by this class.
The default function doesn't change anything, but derived classes can ovveride this.
Reimplemented from FullPhysics::SubStateVectorObserver.
Definition at line 134 of file sub_state_vector_array.h.
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protectedinherited |
Take the given number of state vector parameters.
We determine where the starting point to use is when we attach to the state vector.
Note that it is perfectly legal for Plen to be 0, that just means we don't have any parameters. This is a useful edge case that we support.
Definition at line 80 of file sub_state_vector_observer.cc.
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inlineinherited |
Starting index of state vector used by this object.
Definition at line 25 of file sub_state_vector_observer.h.
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inlineinherited |
Definition at line 181 of file sub_state_vector_array.h.
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inlinevirtualinherited |
Return a string to identify this part of the state, this name should be all lower case and seperate parts with a /.
For example, an aerosol named strat would be named as: aerosol/strat. A gas named CO2 would be named like this: absorber/co2 The name is intended to be used for looking up retrieval values for a configuration system. Classes that have the same type of inputs should have the same name.
Reimplemented from FullPhysics::SubStateVectorArray< AerosolProperty >.
Definition at line 33 of file aerosol_property_imp_base.h.
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inlineinherited |
Length of the sub set of the state vector used by this object.
Definition at line 31 of file sub_state_vector_observer.h.
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inlinevirtualinherited |
Called by update_state with the subset of the state vector used by this class.
Implements FullPhysics::SubStateVectorObserver.
Definition at line 145 of file sub_state_vector_array.h.
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inlinevirtualinherited |
Hook for anything a derived class needs to do after coefficient is updated and before notify_update.
Default is nothing.
Definition at line 167 of file sub_state_vector_array.h.
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inlineinherited |
Definition at line 176 of file sub_state_vector_array.h.
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protectedinherited |
Coefficients.
Definition at line 196 of file sub_state_vector_array.h.
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protectedinherited |
Last covariance matrix updated from the StateVector.
If we haven't updated yet, this will be a 0x0 array.
Definition at line 216 of file sub_state_vector_array.h.
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protectedinherited |
Flag indicating if we only mark coefficients >= pdep_start + press->number_level() in mark_used_sub.
This may seem a bit arcane, but this matches some of the classes that derive from this one (e.g., TemperatureFixedLevel).
Definition at line 225 of file sub_state_vector_array.h.
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protectedinherited |
Definition at line 200 of file observer.h.
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protectedinherited |
Index of first coefficient that depends on the number of pressure levels.
This is only used if mark_according_to_press to true, otherwise we don't do anything with this value.
Definition at line 233 of file sub_state_vector_array.h.
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protectedinherited |
This may be a null pointer, which just means this particular class doesn't store the Pressure object.
Definition at line 203 of file sub_state_vector_array.h.
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protectedinherited |
Definition at line 201 of file observer.h.
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protectedinherited |
The last full covariance matrix we have been with, saved for reference by derived class.
Definition at line 108 of file sub_state_vector_observer.h.
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protectedinherited |
The subset of cov_full that is "owned" by this class, what was passed through update_sub_state.
Saved for reference by derived class.
Definition at line 122 of file sub_state_vector_observer.h.
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protectedinherited |
The last full state vector we have been updated with, saved for reference by derived class.
Definition at line 102 of file sub_state_vector_observer.h.
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protectedinherited |
The subset of sv_full that is "owned" by this class, what was passed through update_sub_state.
Saved for reference by derived class.
Definition at line 115 of file sub_state_vector_observer.h.
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protectedinherited |
Flag indicating which of the coefficients gets updated by the StateVector.
Definition at line 210 of file sub_state_vector_array.h.